2DPG	Oxidoreductase	date	Apr 17, 1998
title	Complex Of Inactive Mutant (H240->N) Of Glucose 6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides With Nadp+
authors	M.J.Adams, C.E.Naylor, S.Paludin, S.Gover
compound		source
Molecule: Glucose 6-Phosphate Dehydrogenase Chain: A Synonym: G6pd Ec: 1.1.1.49 Engineered: Yes Mutation: Yes Other_details: The Mutant Is Inactive, Lacking The Catalyti The Structure Contains A Partial Nadp Bound To Nucleotide B Domain.		Organism_scientific: Leuconostoc Mesenteroides Organism_taxid: 1245 Gene: Plmzh240n Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Su294 Expression_system_plasmid: Puc-19his240asnplmz Expression_system_gene: Plmzh240n
symmetry	Space Group: P 62 2 2	R_factor 0.173 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.700 136.700 121.200 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	NAP	enzyme	Oxidoreductase E.C.1.1.1.49 BRENDA
related structures	by homologous chain: 1E7Y, 1H94
Gene Ontology	Chain Function Process Component A
Primary reference	On the mechanism of the reaction catalyzed by glucose 6-phosphate dehydrogenase., Cosgrove MS, Naylor C, Paludan S, Adams MJ, Levy HR, Biochemistry 1998 Mar 3;37(9):2759-67. PMID:9485426

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (2dpg.pdb1.gz) 157 Kb LPC: Ligand-Protein Contacts for 2DPG CSU: Contacts of Structural Units for 2DPG Likely Quarternary Molecular Structure file(s) for 2DPG Structure Factors (144 Kb) Retrieve 2DPG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DPG from S2C, [Save to disk] Re-refined 2dpg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DPG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DPG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DPG, from MSDmotif at EBI Genome occurence of 2DPG's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2dpg_1, region 1-181,413-426 [Jmol] [rasmolscript] [script source]     - Domain d2dpg_2, region 182-412,427-485 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dpg_A] [2dpg] SWISS-PROT database: [P11411] Domain organization of [G6PD_LEUME] by SWISSPFAM

Other resources with information on 2DPG

Community annotation for 2DPG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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