2DS1 Transferase date Jun 17, 2006
title Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhi
authors M.Ikuta
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbacpak9
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.050 71.220 53.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 1CD BindingDB enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based drug design of a highly potent CDK1,2,4,6 inhibitor with novel macrocyclic quinoxalin-2-one structure., Kawanishi N, Sugimoto T, Shibata J, Nakamura K, Masutani K, Ikuta M, Hirai H, Bioorg Med Chem Lett. 2006 Oct 1;16(19):5122-6. Epub 2006 Jul 28. PMID:16876403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2ds1.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2DS1
  • CSU: Contacts of Structural Units for 2DS1
  • Likely Quarternary Molecular Structure file(s) for 2DS1
  • Retrieve 2DS1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DS1 from S2C, [Save to disk]
  • View 2DS1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DS1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DS1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ds1] [2ds1_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2DS1: [S_TKc ] by SMART
  • Other resources with information on 2DS1
  • Community annotation for 2DS1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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