2DSA Transferase date Jun 24, 2006
title Ternary Complex Of Bphk, A Bacterial Gst
authors E.I.Tocheva, M.E.P.Murphy
compound source
Molecule: Glutathione S-Transferase
Chain: A, B, C, D
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Burkholderia Xenovorans
Organism_taxid: 266265
Strain: Lb400
Gene: Bphk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Gj1158
symmetry Space Group: H 3
R_factor 0.203 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.200 112.200 221.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand GSH, HPX enzyme Transferase E.C.2.5.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of ternary complexes of BphK, a bacterial glutathione S-transferase that reductively dechlorinates polychlorinated biphenyl metabolites., Tocheva EI, Fortin PD, Eltis LD, Murphy ME, J Biol Chem. 2006 Oct 13;281(41):30933-40. Epub 2006 Aug 17. PMID:16920719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (2dsa.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (2dsa.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2DSA
  • CSU: Contacts of Structural Units for 2DSA
  • Likely Quarternary Molecular Structure file(s) for 2DSA
  • Structure Factors (481 Kb)
  • Retrieve 2DSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DSA from S2C, [Save to disk]
  • Re-refined 2dsa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DSA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DSA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dsa_D] [2dsa_B] [2dsa] [2dsa_C] [2dsa_A]
  • SWISS-PROT database: [Q59721]
  • Domain organization of [Q59721_BURXL] by SWISSPFAM
  • Other resources with information on 2DSA
  • Community annotation for 2DSA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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