2DSJ	Transferase	date	Jun 30, 2006
title	Crystal Structure Of Project Id Tt0128 From Thermus Thermoph
authors	K.Shimizu, Riken Structural Genomicsproteomics Initiative (R
compound		source
Molecule: Pyrimidine-Nucleoside (Thymidine) Phosphorylase Chain: A, B Ec: 2.4.2.2 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 1 21 1	R_factor 0.198 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.828 76.234 103.862 90.00 91.26 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CL	enzyme	Transferase E.C.2.4.2.2 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (2dsj.pdb1.gz) 142 Kb LPC: Ligand-Protein Contacts for 2DSJ CSU: Contacts of Structural Units for 2DSJ Likely Quarternary Molecular Structure file(s) for 2DSJ Structure Factors (666 Kb) Retrieve 2DSJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DSJ from S2C, [Save to disk] Re-refined 2dsj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DSJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DSJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DSJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dsj_A] [2dsj_B] [2dsj] SWISS-PROT database: [Q5SHF9] Domain organization of [Q5SHF9_THET8] by SWISSPFAM Domain found in 2DSJ: [PYNP_C ] by SMART

Other resources with information on 2DSJ

Community annotation for 2DSJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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