2DTC	Protein Binding	date	Jul 12, 2006
title	Crystal Structure Of Ms0666
authors	H.Wang, S.Kishishita, K.Murayama, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Ral Guanine Nucleotide Exchange Factor Ralgps1a Chain: A, B Fragment: Pleckstrin Homology Domain Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system_vector_type: Plasmid Expression_system_plasmid: Px051128-20 Other_details: Cell-Free Protein Synthesis
symmetry	Space Group: P 1 21 1	R_factor 0.192 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.680 61.077 43.939 90.00 104.72 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (2dtc.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 2DTC CSU: Contacts of Structural Units for 2DTC Likely Quarternary Molecular Structure file(s) for 2DTC Structure Factors (186 Kb) Retrieve 2DTC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DTC from S2C, [Save to disk] Re-refined 2dtc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DTC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DTC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DTC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dtc] [2dtc_A] [2dtc_B] SWISS-PROT database: [A2AR50] Domain organization of [RGPS1_MOUSE] by SWISSPFAM Domain found in 2DTC: [PH ] by SMART

Other resources with information on 2DTC

Community annotation for 2DTC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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