2DUT Hydrolase Inhibitor date Jul 26, 2006
title Crystal Structure Of A M-Loop Deletion Variant Of Ment In Th Conformation
authors J.C.Whisstock, A.M.Buckle, S.Mcgowan, J.A.Irving
compound source
Molecule: Heterochromatin-Associated Protein Ment
Chain: A, B, C, D
Synonym: Ment
Engineered: Yes
Mutation: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Ment-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad-Hisa
symmetry Space Group: P 32
R_factor 0.278 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
182.559 182.559 96.723 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
note 2DUT supersedes 2H4S
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceX-ray crystal structure of MENT: evidence for functional loop-sheet polymers in chromatin condensation., McGowan S, Buckle AM, Irving JA, Ong PC, Bashtannyk-Puhalovich TA, Kan WT, Henderson KN, Bulynko YA, Popova EY, Smith AI, Bottomley SP, Rossjohn J, Grigoryev SA, Pike RN, Whisstock JC, EMBO J. 2006 Jul 12;25(13):3144-55. Epub 2006 Jun 29. PMID:16810322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (2dut.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (2dut.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (2dut.pdb3.gz) 58 Kb
  • Biological Unit Coordinates (2dut.pdb4.gz) 57 Kb
  • CSU: Contacts of Structural Units for 2DUT
  • Likely Quarternary Molecular Structure file(s) for 2DUT
  • Structure Factors (579 Kb)
  • Retrieve 2DUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DUT from S2C, [Save to disk]
  • Re-refined 2dut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2DUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DUT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DUT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dut] [2dut_C] [2dut_A] [2dut_B] [2dut_D]
  • SWISS-PROT database: [O73790]
  • Domain organization of [SPB10_CHICK] by SWISSPFAM
  • Domain found in 2DUT: [SERPIN ] by SMART
  • Other resources with information on 2DUT
  • Community annotation for 2DUT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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