2DUV Transferase date Jul 27, 2006
title Structure Of Cdk2 With A 3-Hydroxychromones
authors K.H.Kim, J.Lee, T.Park, S.Jeong, C.Hong
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.264 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.629 71.389 72.061 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 371 BindingDB enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference3-Hydroxychromones as cyclin-dependent kinase inhibitors: Synthesis and biological evaluation., Lee J, Park T, Jeong S, Kim KH, Hong C, Bioorg Med Chem Lett. 2006 Dec 16;. PMID:17178224
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2duv.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2DUV
  • CSU: Contacts of Structural Units for 2DUV
  • Likely Quarternary Molecular Structure file(s) for 2DUV
  • Retrieve 2DUV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DUV from S2C, [Save to disk]
  • View 2DUV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DUV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DUV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2duv_A] [2duv]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2DUV: [S_TKc ] by SMART
  • Other resources with information on 2DUV
  • Community annotation for 2DUV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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