2DVW	Cell Cycle Protein-Binding	date	Aug 01, 2006
title	Structure Of The Oncoprotein Gankyrin In Complex With S6 Atp 26s Proteasome
authors	S.Yokoyama, B.Padmanabhan, Riken Structural Genomicsproteomic Initiative (Rsgi)
compound		source
Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 10 Chain: A Synonym: 26s Proteasome Regulatory Subunit P28, Gankyrin Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Psmd10 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet1
Molecule: 26s Protease Regulatory Subunit 6b Chain: B Fragment: C-Terminal Domain Synonym: S6 Atpase, Mip224, Mb67-Interacting Protein, Tat-B Protein 7, Tbp-7; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Psmc4, Tbp7 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet1
symmetry	Space Group: P 21 21 21	R_factor 0.169 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.398 67.886 107.767 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome., Nakamura Y, Nakano K, Umehara T, Kimura M, Hayashizaki Y, Tanaka A, Horikoshi M, Padmanabhan B, Yokoyama S, Structure. 2007 Feb;15(2):179-89. PMID:17292836

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (2dvw.pdb1.gz) 52 Kb CSU: Contacts of Structural Units for 2DVW Likely Quarternary Molecular Structure file(s) for 2DVW Retrieve 2DVW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DVW from S2C, [Save to disk]

View 2DVW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DVW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DVW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dvw_B] [2dvw] [2dvw_A] SWISS-PROT database: [P43686] [Q9Z2X2] Domain organization of [PRS6B_HUMAN] [PSD10_MOUSE] by SWISSPFAM Domain found in 2DVW: [ANK ] by SMART

Other resources with information on 2DVW

Community annotation for 2DVW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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