2DX0 Hydrolase date Aug 22, 2006
title Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse Phospholipase C-Gamma 2
authors N.Handa, T.Takagi, K.Murayama, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Phospholipase C, Gamma 2
Chain: A, B
Fragment: N-Terminal Sh2 Domain, Residues 516-640
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px060201-15
symmetry Space Group: P 41 21 2
R_factor 0.222 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.905 80.905 133.734 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2dx0.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2dx0.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (2dx0.pdb3.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 2DX0
  • CSU: Contacts of Structural Units for 2DX0
  • Likely Quarternary Molecular Structure file(s) for 2DX0
  • Structure Factors (127 Kb)
  • Retrieve 2DX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DX0 from S2C, [Save to disk]
  • Re-refined 2dx0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DX0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DX0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dx0_A] [2dx0_B] [2dx0]
  • SWISS-PROT database: [Q8CIH5]
  • Domain organization of [PLCG2_MOUSE] by SWISSPFAM
  • Domain found in 2DX0: [SH2 ] by SMART
    • Other resources with information on 2DX0
  • Community annotation for 2DX0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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