2DYF Protein Binding date Sep 11, 2006
title Solution Structure Of The First Ww Domain Of Fbp11 Hypa (F Complexed With A Pl (Pplp) Motif Peptide Ligand
authors Y.Kato, T.Miyakawa, J.Kurita, M.Tanokura
compound source
Molecule: Huntingtin-Interacting Protein Hypafbp11
Chain: A
Fragment: The First Ww Domain
Synonym: Pre-Mrna-Processing Factor 40 Homolog A, Formin-Bi Protein 3, Huntingtin Yeast Partner A, Fas Ligand-Associate 1, Ny-Ren-6 Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1

Molecule: Pl (Pplp) Motif Peptide From Myosin Tail Region-I Protein Mti1;
Chain: B
Synonym: Protein Bbc1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (2dyf.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2DYF
  • Original NMR restraints for 2DYF from PDB
  • Retrieve 2DYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DYF from S2C, [Save to disk]
  • View 2DYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DYF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DYF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dyf_A] [2dyf_B] [2dyf]
  • SWISS-PROT database: [P47068] [O75400]
  • Domain organization of [BBC1_YEAST] [PR40A_HUMAN] by SWISSPFAM
  • Domain found in 2DYF: [WW ] by SMART
  • Other resources with information on 2DYF
  • Community annotation for 2DYF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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