2DZN	Protein Binding	date	Sep 29, 2006
title	Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3
authors	S.Yokoyama, B.Padmanabhan, Riken Structural Genomicsproteomic Initiative (Rsgi)
compound		source
Molecule: Probable 26s Proteasome Regulatory Subunit P28 Chain: A, C, E Synonym: Nas6p, Proteasome Non-Atpase Subunit 6 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet1
Molecule: 26s Protease Regulatory Subunit 6b Homolog Chain: B, D, F Fragment: C-Terminal Domain Synonym: Rpt3, Protein Ynt1, Tat-Binding Homolog 2 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet1
symmetry	Space Group: P 1 21 1	R_factor 0.197 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.376 100.220 72.203 90.00 94.70 90.00
method	X-Ray Diffraction	resolution	2.20 Å
Gene Ontology	Chain Function Process Component A, C, E F, D, B
Primary reference	Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome., Nakamura Y, Umehara T, Tanaka A, Horikoshi M, Padmanabhan B, Yokoyama S, Biochem Biophys Res Commun. 2007 Aug 3;359(3):503-9. Epub 2007 May 29. PMID:17555716

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (2dzn.pdb1.gz) 49 Kb Biological Unit Coordinates (2dzn.pdb2.gz) 51 Kb Biological Unit Coordinates (2dzn.pdb3.gz) 50 Kb CSU: Contacts of Structural Units for 2DZN Likely Quarternary Molecular Structure file(s) for 2DZN Retrieve 2DZN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DZN from S2C, [Save to disk]

View 2DZN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DZN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DZN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dzn_A] [2dzn_B] [2dzn] [2dzn_C] [2dzn_F] [2dzn_D] [2dzn_E] SWISS-PROT database: [P33298] [P50086] Domain organization of [PRS6B_YEAST] [PSD10_YEAST] by SWISSPFAM Domain found in 2DZN: [ANK ] by SMART

Other resources with information on 2DZN

Community annotation for 2DZN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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