2DZT Lyase date Sep 30, 2006
title Structure Of Mutant Tryptophan Synthase Alpha-Subunit (D110a Hyperthermophile, Pyrococcus Furiosus
authors K.Ogasahara, Y.Yamagata, K.Yutani, Riken Structural Genomicspr Initiative (Rsgi)
compound source
Molecule: Tryptophan Synthase Alpha Chain
Chain: A, B
Synonym: Tryptophan Synthase Alpha-Subunit
Ec: 4.2.1.20
Engineered: Yes
Mutation: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Gene: Trpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pa1974
symmetry Space Group: C 2 2 21
R_factor 0.182 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.116 77.645 166.543 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand
enzyme Lyase E.C.4.2.1.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (2dzt.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (2dzt.pdb2.gz) 45 Kb
  • CSU: Contacts of Structural Units for 2DZT
  • Likely Quarternary Molecular Structure file(s) for 2DZT
  • Retrieve 2DZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DZT from S2C, [Save to disk]
  • View 2DZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DZT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DZT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dzt] [2dzt_B] [2dzt_A]
  • SWISS-PROT database: [Q8U094]
  • Domain organization of [TRPA_PYRFU] by SWISSPFAM
  • Other resources with information on 2DZT
  • Community annotation for 2DZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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