2E0C Oxidoreductase date Oct 06, 2006
title Crystal Structure Of Isocitrate Dehydrogenase From Sulfolobu Strain7 At 2.0 A Resolution
authors T.Kouyama
compound source
Molecule: 409aa Long Hypothetical Nadp-Dependent Isocitrate Dehydrogenase;
Chain: A, B
Synonym: Isocitrate Dehydrogenase
Ec: 1.1.1.42
Engineered: Yes
Organism_scientific: Sulfolobus Tokodaii Str. 7
Organism_taxid: 273063
Strain: Strain 7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.880 87.720 75.720 90.00 91.37 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (2e0c.pdb1.gz) 135 Kb
  • CSU: Contacts of Structural Units for 2E0C
  • Likely Quarternary Molecular Structure file(s) for 2E0C
  • Structure Factors (460 Kb)
  • Retrieve 2E0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E0C from S2C, [Save to disk]
  • Re-refined 2e0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E0C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E0C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e0c_A] [2e0c] [2e0c_B]
  • SWISS-PROT database: [Q96YK6]
  • Domain organization of [Q96YK6_SULTO] by SWISSPFAM
  • Domain found in 2E0C: [Iso_dh ] by SMART
  • Other resources with information on 2E0C
  • Community annotation for 2E0C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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