2E2W Ligase date Nov 17, 2006
title Solution Structure Of The First Brct Domain Of Human Dna Lig
authors T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsp Initiative (Rsgi)
compound source
Molecule: Dna Ligase 4
Chain: A
Fragment: Brct Domain
Synonym: Dna Ligase Iv, Polydeoxyribonucleotide Synthase [A
Ec: 6.5.1.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lig4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060731-14
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Ligase E.C.6.5.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (589 Kb) [Save to disk]
  • Biological Unit Coordinates (2e2w.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2E2W
  • Original NMR restraints for 2E2W from PDB
  • Retrieve 2E2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E2W from S2C, [Save to disk]
    • View 2E2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2E2W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E2W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e2w] [2e2w_A]
  • SWISS-PROT database: [P49917]
  • Domain organization of [DNLI4_HUMAN] by SWISSPFAM
  • Domain found in 2E2W: [BRCT ] by SMART
    • Other resources with information on 2E2W
  • Community annotation for 2E2W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science