2E32 Ligase date Nov 20, 2006
title Structural Basis For Selection Of Glycosylated Substrate By Ubiquitin Ligase
authors T.Mizushima, Y.Yoshida, T.Kumanomidou, Y.Hasegawa, T.Yamane, K.Ta
compound source
Molecule: F-Box Only Protein 2
Chain: A, C
Synonym: Fbs1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(Ril)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: S-Phase Kinase-Associated Protein 1a
Chain: B, D
Synonym: Cyclin Acdk2-Associated Protein P19, P19a, P19skp Polymerase II Elongation Factor-Like Protein, Organ Of Cort 2, Ocp-II Protein, Ocp-2, Transcription Elongation Factor B Skp1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(Ril)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.942 109.816 153.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.52 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase., Mizushima T, Yoshida Y, Kumanomidou T, Hasegawa Y, Suzuki A, Yamane T, Tanaka K, Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5777-81. Epub 2007 Mar 26. PMID:17389369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2e32.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (2e32.pdb2.gz) 60 Kb
  • CSU: Contacts of Structural Units for 2E32
  • Likely Quarternary Molecular Structure file(s) for 2E32
  • Structure Factors (114 Kb)
  • Retrieve 2E32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E32 from S2C, [Save to disk]
  • Re-refined 2e32 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E32
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E32, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e32_A] [2e32_B] [2e32] [2e32_C] [2e32_D]
  • SWISS-PROT database: [Q80UW2] [P63208]
  • Domain organization of [FBX2_MOUSE] [SKP1_HUMAN] by SWISSPFAM
  • Domains found in 2E32: [FBA] [Skp1 ] by SMART
  • Other resources with information on 2E32
  • Community annotation for 2E32 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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