2E33 Ligase Hydrolase date Nov 20, 2006
title Structural Basis For Selection Of Glycosylated Substrate By Ubiquitin Ligase
authors T.Mizushima, Y.Yoshida, T.Kumanomidou, Y.Hasegawa, T.Yamane, K.Ta
compound source
Molecule: F-Box Only Protein 2
Chain: A
Fragment: Residues 105-297
Synonym: Fbs1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(Ril)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Ribonuclease Pancreatic
Chain: B
Synonym: Rnase 1, Rnase A, Ribonuclease B
Ec: 3.1.27.5

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 4 3 2
R_factor 0.216 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.314 148.314 148.314 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand BMA, MAN, NAG enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B
  • ribonuclease A activity


  • Primary referenceStructural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase., Mizushima T, Yoshida Y, Kumanomidou T, Hasegawa Y, Suzuki A, Yamane T, Tanaka K, Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5777-81. Epub 2007 Mar 26. PMID:17389369
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2e33.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2E33
  • CSU: Contacts of Structural Units for 2E33
  • Likely Quarternary Molecular Structure file(s) for 2E33
  • Structure Factors (127 Kb)
  • Retrieve 2E33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E33 from S2C, [Save to disk]
  • Re-refined 2e33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E33
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E33, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e33_A] [2e33_B] [2e33]
  • SWISS-PROT database: [Q80UW2] [P61823]
  • Domain organization of [FBX2_MOUSE] [RNAS1_BOVIN] by SWISSPFAM
  • Domains found in 2E33: [FBA] [RNAse_Pc ] by SMART
  • Other resources with information on 2E33
  • Community annotation for 2E33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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