2E40 Hydrolase date Dec 01, 2006
title Crystal Structure Of Intracellular Family 1 Beta-Glucosidase From The Basidiomycete Phanerochaete Chrysosporium In Compl Gluconolactone
authors Y.Nijikken, T.Tsukada, K.Igarashi, M.Samejima, S.Fushinobu
compound source
Molecule: Beta-Glucosidase
Chain: A, B
Ec: 3.2.1.21
Engineered: Yes
Organism_scientific: Phanerochaete Chrysosporium
Organism_taxid: 5306
Strain: K-3
Gene: Bgl1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbadtopo Thiofusion
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.789 120.081 133.041 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand LGC enzyme Hydrolase E.C.3.2.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of intracellular family 1 beta-glucosidase BGL1A from the basidiomycete Phanerochaete chrysosporium., Nijikken Y, Tsukada T, Igarashi K, Samejima M, Wakagi T, Shoun H, Fushinobu S, FEBS Lett. 2007 Apr 3;581(7):1514-20. Epub 2007 Mar 13. PMID:17376440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (2e40.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (2e40.pdb2.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 2E40
  • CSU: Contacts of Structural Units for 2E40
  • Likely Quarternary Molecular Structure file(s) for 2E40
  • Structure Factors (647 Kb)
  • Retrieve 2E40 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E40 from S2C, [Save to disk]
  • Re-refined 2e40 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E40 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E40
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E40, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e40_A] [2e40] [2e40_B]
  • SWISS-PROT database: [Q25BW5]
  • Domain organization of [BGL1A_PHACH] by SWISSPFAM
  • Other resources with information on 2E40
  • Community annotation for 2E40 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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