2E6K	Transferase	date	Dec 27, 2006
title	X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
authors	H.Yoshida, S.Kamitori, Y.Agari, H.Iino, M.Kanagawa, N.Nakagawa, A. S.Kuramitsu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Transketolase Chain: A, B, C, D Ec: 2.2.1.1 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Gene: Tt0505 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.217 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.610 88.960 117.180 72.48 89.13 73.36
method	X-Ray Diffraction	resolution	2.09 Å
ligand	MSE	enzyme	Transferase E.C.2.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (431 Kb) [Save to disk] Biological Unit Coordinates (2e6k.pdb1.gz) 219 Kb Biological Unit Coordinates (2e6k.pdb2.gz) 210 Kb LPC: Ligand-Protein Contacts for 2E6K CSU: Contacts of Structural Units for 2E6K Structure Factors (1628 Kb) Retrieve 2E6K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2E6K from S2C, [Save to disk] Re-refined 2e6k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2E6K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2E6K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2E6K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2e6k_A] [2e6k_B] [2e6k_D] [2e6k_C] [2e6k] SWISS-PROT database: [Q5SM35] Domain organization of [Q5SM35_THET8] by SWISSPFAM Domain found in 2E6K: [Transket_pyr ] by SMART

Other resources with information on 2E6K

Community annotation for 2E6K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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