2E6U Structural Genomics, Unknown Function date Jan 03, 2007
title Crystal Structure Of Hypothetical Protein Ph1109 From Pyroco Horikoshii
authors Y.Kitago, Y.Min, N.Watanabe, I.Tanaka
compound source
Molecule: Hypothetical Protein Ph1109
Chain: X
Engineered: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Gene: Ph1109
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-26b
symmetry Space Group: P 65 2 2
R_factor 0.205 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.563 69.563 142.606 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA, CL, COA enzyme
note 2E6U supersedes 2CZZ
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceStructure determination of a novel protein by sulfur SAD using chromium radiation in combination with a new crystal-mounting method., Kitago Y, Watanabe N, Tanaka I, Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1013-21. Epub 2005, Jul 20. PMID:16041065
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2e6u.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (2e6u.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (2e6u.pdb3.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2E6U
  • CSU: Contacts of Structural Units for 2E6U
  • Likely Quarternary Molecular Structure file(s) for 2E6U
  • Structure Factors (328 Kb)
  • Retrieve 2E6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E6U from S2C, [Save to disk]
  • Re-refined 2e6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E6U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E6U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e6u] [2e6u_X]
  • SWISS-PROT database: [O58836]
  • Domain organization of [O58836_PYRHO] by SWISSPFAM
  • Domain found in 2E6U: [CoA_binding ] by SMART
  • Other resources with information on 2E6U
  • Community annotation for 2E6U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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