2E98 Transferase date Jan 24, 2007
title E. Coli Undecaprenyl Pyrophosphate Synthase In Complex With
authors R.T.Guo, T.P.Ko, R.Cao, P.H.Liang, E.Oldfield, A.H.J.Wang
compound source
Molecule: Undecaprenyl Pyrophosphate Synthetase
Chain: A, B
Synonym: Upp Synthetase, Di-Trans,Poly-Cis-Decaprenylcistra Undecaprenyl Diphosphate Synthase, Uds;
Ec: 2.5.1.31
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32lic
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.985 67.757 110.713 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand B29 enzyme Transferase E.C.2.5.1.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBisphosphonates target multiple sites in both cis- and trans-prenyltransferases., Guo RT, Cao R, Liang PH, Ko TP, Chang TH, Hudock MP, Jeng WY, Chen CK, Zhang Y, Song Y, Kuo CJ, Yin F, Oldfield E, Wang AH, Proc Natl Acad Sci U S A. 2007 May 29;. PMID:17535895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2e98.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 2E98
  • CSU: Contacts of Structural Units for 2E98
  • Likely Quarternary Molecular Structure file(s) for 2E98
  • Structure Factors (353 Kb)
  • Retrieve 2E98 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E98 from S2C, [Save to disk]
  • Re-refined 2e98 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E98 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E98
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E98, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e98_A] [2e98_B] [2e98]
  • SWISS-PROT database: [P60472]
  • Domain organization of [UPPS_ECOLI] by SWISSPFAM
  • Other resources with information on 2E98
  • Community annotation for 2E98 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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