2E9A Transferase date Jan 24, 2007
title E. Coli Undecaprenyl Pyrophosphate Synthase In Complex With
authors R.T.Guo, T.P.Ko, R.Cao, P.H.Liang, E.Oldfield, A.H.J.Wang
compound source
Molecule: Undecaprenyl Pyrophosphate Synthetase
Chain: A, B
Synonym: Upp Synthetase, Di-Trans,Poly-Cis-Decaprenylcistra Undecaprenyl Diphosphate Synthase, Uds;
Ec: 2.5.1.31
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32lic
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.682 68.157 109.886 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand B28 enzyme Transferase E.C.2.5.1.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBisphosphonates target multiple sites in both cis- and trans-prenyltransferases., Guo RT, Cao R, Liang PH, Ko TP, Chang TH, Hudock MP, Jeng WY, Chen CK, Zhang Y, Song Y, Kuo CJ, Yin F, Oldfield E, Wang AH, Proc Natl Acad Sci U S A. 2007 May 29;. PMID:17535895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2e9a.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 2E9A
  • CSU: Contacts of Structural Units for 2E9A
  • Likely Quarternary Molecular Structure file(s) for 2E9A
  • Structure Factors (281 Kb)
  • Retrieve 2E9A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E9A from S2C, [Save to disk]
  • Re-refined 2e9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E9A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E9A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E9A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e9a_A] [2e9a_B] [2e9a]
  • SWISS-PROT database: [P60472]
  • Domain organization of [UPPS_ECOLI] by SWISSPFAM
  • Other resources with information on 2E9A
  • Community annotation for 2E9A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science