2E9L Hydrolase date Jan 25, 2007
title Crystal Structure Of Human Cytosolic Neutral Beta-Glycosylce (Klotho-Related Prote:Klrp) Complex With Glucose And Fatty
authors Y.Kakuta, Y.Hayashi, N.Okino, M.Ito
compound source
Molecule: Cytosolic Beta-Glucosidase
Chain: A
Synonym: Cytosolic Neutral Beta-Glycosylceramidase, Klotho- Protein, Klrp, Cytosolic Beta-Glucosidase- Like Protein 1;
Ec: 3.2.1.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23b
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.035 83.976 94.882 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand BGC, GOL, OLA, PLM enzyme Hydrolase E.C.3.2.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceKlotho-related protein is a novel cytosolic neutral beta -glycosylceramidase., Hayashi Y, Okino N, Kakuta Y, Shiknai T, Tani M, Narimatsu H, Ito M, J Biol Chem. 2007 Jun 26;. PMID:17595169
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (2e9l.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 2E9L
  • CSU: Contacts of Structural Units for 2E9L
  • Likely Quarternary Molecular Structure file(s) for 2E9L
  • Structure Factors (991 Kb)
  • Retrieve 2E9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2E9L from S2C, [Save to disk]
  • Re-refined 2e9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2E9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2E9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2E9L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2e9l] [2e9l_A]
  • SWISS-PROT database: [Q9H227]
  • Domain organization of [GBA3_HUMAN] by SWISSPFAM
  • Other resources with information on 2E9L
  • Community annotation for 2E9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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