2EAR Hydrolase date Feb 02, 2007
title P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
authors M.Takahashi, Y.Kondou, C.Toyoshima
compound source
Molecule: Sarcoplasmicendoplasmic Reticulum Calcium Atpase
Chain: A
Synonym: Calcium Pump 1, Serca1, Sr Ca(2+)-Atpase 1, Calciu Transporting Atpase Sarcoplasmic Reticulum Type, Fast Twitc Muscle Isoform, Endoplasmic Reticulum Class 12 Ca(2+)Atpas
Ec: 3.6.3.8
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Skeletal Muscle (White)
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.849 95.945 154.493 90.00 94.90 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand ACE, TG1 BindingDB enzyme Hydrolase E.C.3.6.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInterdomain communication in calcium pump as revealed in the crystal structures with transmembrane inhibitors., Takahashi M, Kondou Y, Toyoshima C, Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5800-5. Epub 2007 Mar 26. PMID:17389383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (2ear.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 2EAR
  • CSU: Contacts of Structural Units for 2EAR
  • Likely Quarternary Molecular Structure file(s) for 2EAR
  • Retrieve 2EAR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EAR from S2C, [Save to disk]
  • View 2EAR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EAR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EAR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ear] [2ear_A]
  • SWISS-PROT database: [P04191]
  • Belongs to the p-type atpase (p-atpase) superfamily according to TCDB.
  • Domain organization of [AT2A1_RABIT] by SWISSPFAM
  • Domain found in 2EAR: [Cation_ATPase_N ] by SMART
  • Other resources with information on 2EAR
  • Community annotation for 2EAR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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