2EB7 Transcription date Feb 07, 2007
title Crystal Structure Of The Hypothetical Regulator From Sulfolo Tokodaii 7
authors T.S.Kumarevel, M.Nishio, A.Shinkai, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: 146aa Long Hypothetical Transcriptional Regulator
Chain: A
Engineered: Yes
Organism_scientific: Sulfolobus Tokodaii
Organism_taxid: 273063
Strain: 7
Gene: St1710
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 41 21 2
R_factor 0.228 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.919 45.919 138.559 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the MarR family regulatory protein, ST1710, from Sulfolobus tokodaii strain 7., Kumarevel T, Tanaka T, Nishio M, Gopinath SC, Takio K, Shinkai A, Kumar PK, Yokoyama S, J Struct Biol. 2007 Sep 8;. PMID:17933554
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2eb7.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 2EB7
  • Likely Quarternary Molecular Structure file(s) for 2EB7
  • Structure Factors (107 Kb)
  • Retrieve 2EB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EB7 from S2C, [Save to disk]
  • Re-refined 2eb7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2EB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EB7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EB7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2eb7_A] [2eb7]
  • SWISS-PROT database: [Q96ZY1]
  • Domain organization of [Q96ZY1_SULTO] by SWISSPFAM
  • Domain found in 2EB7: [HTH_MARR ] by SMART
  • Other resources with information on 2EB7
  • Community annotation for 2EB7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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