2ED1 Signaling Protein date Feb 14, 2007
title Solution Structure Of The Sh3 Domain Of 130 Kda Phosphatidyl 4,5-Biphosphate-Dependent Arf1 Gtpase-Activating Protein
authors H.Abe, N.Tochio, K.Miyamoto, K.Saito, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: 130 Kda Phosphatidylinositol 4,5-Biphosphate-Depe Gtpase-Activating Protein;
Chain: A
Fragment: Sh3 Domain
Synonym: Pip2-Dependent Arf1 Gap, Adp-Ribosylation Factor-D Gtpase-Activating Protein 1, Arf Gtpase-Activating Protein Development And Differentiation-Enhancing Factor 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ddef1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050627-26
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk]
  • Biological Unit Coordinates (2ed1.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2ED1
  • Original NMR restraints for 2ED1 from PDB
  • Retrieve 2ED1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ED1 from S2C, [Save to disk]
  • View 2ED1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ED1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ED1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d2ed1, region D:251-348 [Jmol] [rasmolscript] [script source]
        - Domain d1f2ed1, region D:81-201 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ed1] [2ed1_A]
  • SWISS-PROT database: [Q9ULH1]
  • Domain organization of [ASAP1_HUMAN] by SWISSPFAM
  • Domain found in 2ED1: [SH3 ] by SMART
  • Other resources with information on 2ED1
  • Community annotation for 2ED1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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