2ERQ	Toxin	date	Oct 25, 2005
title	Crystal Structure Of Vascular Apoptosis-Inducing Protein-1(T Crystal Form)
authors	S.Takeda, T.Igarashi, S.Araki
compound		source
Molecule: Vascular Apoptosis-Inducing Protein 1 Chain: A, B Fragment: Residues 184-610 Synonym: Vap-1		Organism_scientific: Crotalus Atrox Organism_common: Western Diamondback Rattlesnake Organism_taxid: 8730 Secretion: Venom
symmetry	Space Group: P 41 21 2	R_factor 0.229 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.940 93.940 244.820 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CA, NAG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of VAP1 reveal ADAMs' MDC domain architecture and its unique C-shaped scaffold., Takeda S, Igarashi T, Mori H, Araki S, EMBO J. 2006 Jun 7;25(11):2388-96. Epub 2006 May 11. PMID:16688218

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk] Biological Unit Coordinates (2erq.pdb1.gz) 134 Kb Biological Unit Coordinates (2erq.pdb2.gz) 135 Kb LPC: Ligand-Protein Contacts for 2ERQ CSU: Contacts of Structural Units for 2ERQ Likely Quarternary Molecular Structure file(s) for 2ERQ Structure Factors (318 Kb) Retrieve 2ERQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ERQ from S2C, [Save to disk] Re-refined 2erq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ERQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ERQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ERQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2erq_A] [2erq] [2erq_B] SWISS-PROT database: [Q9DGB9] Domain organization of [VMV1_CROAT] by SWISSPFAM Domains found in 2ERQ: [ACR] [DISIN ] by SMART

Other resources with information on 2ERQ

Community annotation for 2ERQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---