2EVD Lipid Transport date Oct 31, 2005
title Crystal Structure Of Human Glycolipid Transfer Protein Compl 12:0 Lactosylceramide
authors L.Malinina, M.L.Malakhova, A.T.Kanack, R.Abagyan, R.E.Brown, D.J.
compound source
Molecule: Glycolipid Transfer Protein
Chain: A
Synonym: Gltp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30 Xa-Lic
symmetry Space Group: C 1 2 1
R_factor 0.178 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.592 49.360 68.632 90.00 122.38 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BGC, D10, DAO, GAL, OCT, SPH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • glycolipid transporter activ...
  • ceramide 1-phosphate transpo...


  • Primary referenceThe liganding of glycolipid transfer protein is controlled by glycolipid acyl structure., Malinina L, Malakhova ML, Kanack AT, Lu M, Abagyan R, Brown RE, Patel DJ, PLoS Biol. 2006 Nov;4(11):e362. PMID:17105344
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2evd.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2EVD
  • CSU: Contacts of Structural Units for 2EVD
  • Likely Quarternary Molecular Structure file(s) for 2EVD
  • Structure Factors (102 Kb)
  • Retrieve 2EVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EVD from S2C, [Save to disk]
  • Re-refined 2evd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2EVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EVD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EVD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2evd] [2evd_A]
  • SWISS-PROT database: [Q9NZD2]
  • Domain organization of [GLTP_HUMAN] by SWISSPFAM
  • Other resources with information on 2EVD
  • Community annotation for 2EVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science