2EZK Dna Binding Protein date Oct 04, 1997
title Solution Nmr Structure Of The Ibeta Subdomain Of The Mu End Binding Domain Of Phage Mu Transposase, Regularized Mean St
authors G.M.Clore, R.T.Clubb, S.Schumaker, A.M.Gronenborn
compound source
Molecule: Transposase
Chain: A
Fragment: Ibeta Subdomain, Residues 77 - 174
 Organism_scientific: Enterobacteria Phage Mu
Organism_taxid: 10677
methodSolution NMR
related structures by homologous chain: 2EZL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the Mu end DNA-binding ibeta subdomain of phage Mu transposase: modular DNA recognition by two tethered domains., Schumacher S, Clubb RT, Cai M, Mizuuchi K, Clore GM, Gronenborn AM, EMBO J 1997 Dec 15;16(24):7532-41. PMID:9405381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2ezk.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2EZK
  • Retrieve 2EZK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EZK from S2C, [Save to disk]
    • View 2EZK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EZK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EZK, from MSDmotif at EBI
  • Genome occurence of 2EZK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2ezk__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ezk_A] [2ezk]
  • SWISS-PROT database: [P07636]
  • Domain organization of [TRA_BPMU] by SWISSPFAM
    • Other resources with information on 2EZK
  • Community annotation for 2EZK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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