2F00	Ligase	date	Nov 10, 2005
title	Escherichia Coli Murc
authors	T.Deva, E.N.Baker, C.J.Squire, C.A.Smith
compound		source
Molecule: Udp-N-Acetylmuramate--L-Alanine Ligase Chain: A, B Synonym: Udp-N-Acetylmuramoyl-L-Alanine Synthetase Ec: 6.3.2.8 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Murc Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.926 93.134 176.792 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	MG, MSE	enzyme	Ligase E.C.6.3.2.8 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of Escherichia coliUDP-N-acetylmuramoyl:L-alanine ligase (MurC)., Deva T, Baker EN, Squire CJ, Smith CA, Acta Crystallogr D Biol Crystallogr. 2006 Dec;62(Pt 12):1466-74. Epub 2006, Nov 23. PMID:17139082

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk] Biological Unit Coordinates (2f00.pdb1.gz) 152 Kb LPC: Ligand-Protein Contacts for 2F00 CSU: Contacts of Structural Units for 2F00 Likely Quarternary Molecular Structure file(s) for 2F00 Structure Factors (325 Kb) Retrieve 2F00 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F00 from S2C, [Save to disk] Re-refined 2f00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F00 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F00

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F00, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f00_A] [2f00_B] [2f00] SWISS-PROT database: [P17952] Domain organization of [MURC_ECOLI] by SWISSPFAM

Other resources with information on 2F00

Community annotation for 2F00 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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