2F0A Signaling Protein date Nov 12, 2005
title Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus D Pdz Domain
authors N.Friedland, L.W.Hung, B.Cheyette, R.T.Moon, T.N.Earnest
compound source
Molecule: Segment Polarity Protein Dishevelled Homolog Dvl-
Chain: A, B, C, D
Fragment: Dishevelled Pdz Domain
Synonym: Dishevelled-2, Dsh Homolog 2, Xdsh
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Dvl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: N834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21b
symmetry Space Group: P 61
R_factor 0.214 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.834 89.834 82.471 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CO, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2f0a.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (2f0a.pdb2.gz) 16 Kb
  • Biological Unit Coordinates (2f0a.pdb3.gz) 14 Kb
  • Biological Unit Coordinates (2f0a.pdb4.gz) 15 Kb
  • Biological Unit Coordinates (2f0a.pdb5.gz) 56 Kb
  • Biological Unit Coordinates (2f0a.pdb6.gz) 43 Kb
  • Biological Unit Coordinates (2f0a.pdb7.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2F0A
  • CSU: Contacts of Structural Units for 2F0A
  • Likely Quarternary Molecular Structure file(s) for 2F0A
  • Structure Factors (257 Kb)
  • Retrieve 2F0A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F0A from S2C, [Save to disk]
  • Re-refined 2f0a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F0A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F0A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F0A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f0a_C] [2f0a_D] [2f0a_A] [2f0a] [2f0a_B]
  • SWISS-PROT database: [P51142]
  • Domain organization of [DVL2_XENLA] by SWISSPFAM
  • Domain found in 2F0A: [PDZ ] by SMART
  • Other resources with information on 2F0A
  • Community annotation for 2F0A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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