2F1D	Lyase	date	Nov 14, 2005
title	X-Ray Structure Of Imidazoleglycerol-Phosphate Dehydratase
authors	D.W.Rice, S.E.Glynn, P.J.Baker, S.E.Sedelnikova, C.L.Davies, T.C.
compound		source
Molecule: Imidazoleglycerol-Phosphate Dehydratase 1 Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Synonym: Igpd 1 Ec: 4.2.1.19 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Piget13 Expression_system_plasmid: Pet24
symmetry	Space Group: H 3	R_factor 0.240 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 157.949 157.949 479.965 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	MN, SO4	enzyme	Lyase E.C.4.2.1.19 BRENDA
Gene Ontology	Chain Function Process Component F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G
Primary reference	Structure and mechanism of imidazoleglycerol-phosphate dehydratase., Glynn SE, Baker PJ, Sedelnikova SE, Davies CL, Eadsforth TC, Levy CW, Rodgers HF, Blackburn GM, Hawkes TR, Viner R, Rice DW, Structure. 2005 Dec;13(12):1809-17. PMID:16338409

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (385 Kb) [Save to disk] Biological Unit Coordinates (2f1d.pdb1.gz) 557 Kb Biological Unit Coordinates (2f1d.pdb2.gz) 191 Kb Biological Unit Coordinates (2f1d.pdb3.gz) 559 Kb LPC: Ligand-Protein Contacts for 2F1D CSU: Contacts of Structural Units for 2F1D Likely Quarternary Molecular Structure file(s) for 2F1D Structure Factors (819 Kb) Retrieve 2F1D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F1D from S2C, [Save to disk] Re-refined 2f1d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F1D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F1D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F1D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f1d_A] [2f1d_D] [2f1d_G] [2f1d_M] [2f1d_K] [2f1d_P] [2f1d_C] [2f1d_O] [2f1d_H] [2f1d_F] [2f1d_I] [2f1d_J] [2f1d_B] [2f1d_L] [2f1d] [2f1d_N] [2f1d_E] SWISS-PROT database: [P34047] Domain organization of [HIS7A_ARATH] by SWISSPFAM

Other resources with information on 2F1D

Community annotation for 2F1D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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