2F1H Recombination date Nov 14, 2005
title Recombinase In Complex With Amp-Pnp And Potassium
authors X.Qian, Y.He, Y.Wu, Y.Luo
compound source
Molecule: Dna Repair And Recombination Protein Rada
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Methanococcus Voltae
Organism_taxid: 2188
Gene: Rada
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus-Ril
symmetry Space Group: P 61
R_factor 0.227 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.453 84.453 105.484 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand ANP, K, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAsp302 determines potassium dependence of a RadA recombinase from Methanococcus voltae., Qian X, He Y, Wu Y, Luo Y, J Mol Biol. 2006 Jul 14;360(3):537-47. Epub 2006 Jun 9. PMID:16782126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2f1h.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2F1H
  • CSU: Contacts of Structural Units for 2F1H
  • Likely Quarternary Molecular Structure file(s) for 2F1H
  • Structure Factors (93 Kb)
  • Retrieve 2F1H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F1H from S2C, [Save to disk]
  • Re-refined 2f1h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F1H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F1H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F1H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f1h] [2f1h_A]
  • SWISS-PROT database: [O73948]
  • Domain organization of [RADA_METVO] by SWISSPFAM
  • Domains found in 2F1H: [AAA] [HhH1 ] by SMART
  • Other resources with information on 2F1H
  • Community annotation for 2F1H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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