2F1V Membrane Protein date Nov 15, 2005
title Outer Membrane Protein Ompw
authors B.Van Den Berg
compound source
Molecule: Outer Membrane Protein W
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Strain: K-12
Gene: Ompw
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pb22
symmetry Space Group: P 21 21 21
R_factor 0.292 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.666 118.776 118.519 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceThe outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel., Hong H, Patel DR, Tamm LK, van den Berg B, J Biol Chem. 2006 Mar 17;281(11):7568-77. Epub 2006 Jan 12. PMID:16414958
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (2f1v.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2f1v.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (2f1v.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (2f1v.pdb4.gz) 31 Kb
  • Biological Unit Coordinates (2f1v.pdb5.gz) 31 Kb
  • Biological Unit Coordinates (2f1v.pdb6.gz) 31 Kb
  • Biological Unit Coordinates (2f1v.pdb7.gz) 170 Kb
  • Biological Unit Coordinates (2f1v.pdb8.gz) 87 Kb
  • Biological Unit Coordinates (2f1v.pdb9.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2F1V
  • CSU: Contacts of Structural Units for 2F1V
  • Likely Quarternary Molecular Structure file(s) for 2F1V
  • Structure Factors (449 Kb)
  • Retrieve 2F1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F1V from S2C, [Save to disk]
  • Re-refined 2f1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2F1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2F1V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F1V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f1v] [2f1v_F] [2f1v_D] [2f1v_E] [2f1v_B] [2f1v_A] [2f1v_C]
  • SWISS-PROT database: [P0A915]
  • Belongs to the bacterial porin, ompw (ompw) family according to TCDB.
  • Domain organization of [OMPW_ECOLI] by SWISSPFAM
    • Other resources with information on 2F1V
  • Community annotation for 2F1V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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