2F2T	Transferase	date	Nov 17, 2005
title	Crystal Structure Of Nucleoside 2-Deoxyribosyltransferase Fr Trypanosoma Brucei At 1.7 A Resolution With 5-Aminoisoquino
authors	J.Bosch, M.A.Robien, W.G.J.Hol, Structural Genomics Of Pathogen Protozoa Consortium (Sgpp)
compound		source
Molecule: Nucleoside 2-Deoxyribosyltransferase Chain: A, B Ec: 2.4.2.6 Engineered: Yes Mutation: Yes		Organism_scientific: Trypanosoma Brucei Organism_taxid: 5691 Gene: Tb05.30h13.400 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21star(De3) Expression_system_vector_type: T7 System Expression_system_plasmid: Pet14b
symmetry	Space Group: C 1 2 1	R_factor 0.177 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.960 75.493 86.324 90.00 90.05 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	5IQ, GOL, MSE, SO4	enzyme	Transferase E.C.2.4.2.6 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Using fragment cocktail crystallography to assist inhibitor design of Trypanosoma brucei nucleoside 2-deoxyribosyltransferase., Bosch J, Robien MA, Mehlin C, Boni E, Riechers A, Buckner FS, Van Voorhis WC, Myler PJ, Worthey EA, DeTitta G, Luft JR, Lauricella A, Gulde S, Anderson LA, Kalyuzhniy O, Neely HM, Ross J, Earnest TN, Soltis M, Schoenfeld L, Zucker F, Merritt EA, Fan E, Verlinde CL, Hol WG, J Med Chem. 2006 Oct 5;49(20):5939-46. PMID:17004709

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (2f2t.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 2F2T CSU: Contacts of Structural Units for 2F2T Likely Quarternary Molecular Structure file(s) for 2F2T Structure Factors (306 Kb) Retrieve 2F2T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F2T from S2C, [Save to disk] Re-refined 2f2t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F2T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F2T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F2T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f2t_A] [2f2t] [2f2t_B] SWISS-PROT database: [Q57VC7] Domain organization of [Q57VC7_9TRYP] by SWISSPFAM

Other resources with information on 2F2T

Community annotation for 2F2T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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