2F38 Oxidoreductase date Nov 18, 2005
title Crystal Structure Of Prostaglandin F Synathase Containing Bi
authors J.Komoto, T.Yamada, K.Watanabe, D.F.Woodward, F.Takusagawa
compound source
Molecule: Aldo-Keto Reductase Family 1 Member C3
Chain: A
Synonym: Trans-1,2-Dihydrobenzene-1,2-Diol Dehydrogenase, 3 Hydroxysteroid Dehydrogenase Type 2, 3-Alpha-Hsd Type 2, 3- Type II, Brain, Prostaglandin F Synthase, Pgfs, Estradiol 1 Dehydrogenase, 17-Beta-Hydroxysteroid Dehydrogenase Type 5, Hsd 5, Chlordecone Reductase Homolog Hakrb, Ha1753, Dihydro Dehydrogenase Type I, Dihydrodiol Dehydrogenase 3, Dd3, Dd-
Ec: 1.3.1.20, 1.1.1.213, 1.1.1.188, 1.1.1.62
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akr1c3, Ddh1, Kiaa0119, Pgfs
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hb101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc-Hlufs
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.270 78.160 48.890 90.00 100.20 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 15M, NAP enzyme Oxidoreductase E.C.1.3.1.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • NADP-retinol dehydrogenase a...


  • Primary referenceProstaglandin F2alpha formation from prostaglandin H2 by prostaglandin F synthase (PGFS): crystal structure of PGFS containing bimatoprost., Komoto J, Yamada T, Watanabe K, Woodward DF, Takusagawa F, Biochemistry. 2006 Feb 21;45(7):1987-96. PMID:16475787
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2f38.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 2F38
  • CSU: Contacts of Structural Units for 2F38
  • Likely Quarternary Molecular Structure file(s) for 2F38
  • Structure Factors (161 Kb)
  • Retrieve 2F38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F38 from S2C, [Save to disk]
  • Re-refined 2f38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F38
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F38, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f38] [2f38_A]
  • SWISS-PROT database: [P42330]
  • Domain organization of [AK1C3_HUMAN] by SWISSPFAM
  • Other resources with information on 2F38
  • Community annotation for 2F38 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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