2F3Q Transferase date Nov 22, 2005
title Crystal Structure Of The Glycogen Phosphorylase B Methyl-N Glucopyranosyl)Oxamate Complex
authors N.G.Oikonomakos, D.D.Leonidas
compound source
Molecule: Glycogen Phosphorylase, Muscle Form
Chain: A
Synonym: Myophosphorylase
Ec: 2.4.1.1
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Muscle
symmetry Space Group: P 43 21 2
R_factor 0.183 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.569 128.569 116.118 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand 6GP, PLP enzyme Transferase E.C.2.4.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding of oxalyl derivatives of beta-d-glucopyranosylamine to muscle glycogen phosphorylase b., Hadjiloi T, Tiraidis C, Chrysina ED, Leonidas DD, Oikonomakos NG, Tsipos P, Gimisis T, Bioorg Med Chem. 2006 Jun 1;14(11):3872-82. Epub 2006 Feb 7. PMID:16464598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (2f3q.pdb1.gz) 272 Kb
  • LPC: Ligand-Protein Contacts for 2F3Q
  • CSU: Contacts of Structural Units for 2F3Q
  • Likely Quarternary Molecular Structure file(s) for 2F3Q
  • Retrieve 2F3Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F3Q from S2C, [Save to disk]
  • View 2F3Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F3Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F3Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f3q_A] [2f3q]
  • SWISS-PROT database: [P00489]
  • Domain organization of [PYGM_RABIT] by SWISSPFAM
  • Other resources with information on 2F3Q
  • Community annotation for 2F3Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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