2F4G Hydrolase date Nov 23, 2005
title Triclinic Cross-Linked Lysozyme Soaked In Bromoethanol 1m
authors T.Prange, M.Salem
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, G
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Other_details: Egg
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.130 31.750 34.190 88.96 108.42 111.47
method X-Ray Diffractionresolution 1.65 Å
ligand BRJ, NO3 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOn the edge of the denaturation process: Application of X-ray diffraction to barnase and lysozyme cross-linked crystals with denaturants in molar concentrations., Salem M, Mauguen Y, Prange T, Biochim Biophys Acta. 2006 Mar 20;. PMID:16600702
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2f4g.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2F4G
  • CSU: Contacts of Structural Units for 2F4G
  • Likely Quarternary Molecular Structure file(s) for 2F4G
  • Structure Factors (90 Kb)
  • Retrieve 2F4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F4G from S2C, [Save to disk]
  • Re-refined 2f4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F4G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F4G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f4g_A] [2f4g]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 2F4G: [LYZ1 ] by SMART
  • Other resources with information on 2F4G
  • Community annotation for 2F4G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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