2F4J	Transferase	date	Nov 23, 2005
title	Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Complex With The Aurora Kinase Inhibitor Vx-680
authors	M.A.Young, N.P.Shah, L.H.Chao, P.Zarrinkar, P.Sawyers, J.Kuriyan
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Abl1 Chain: A Fragment: Kinase Domain, Residues 227-513 Synonym: P150, C- Abl Ec: 2.7.1.112 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Abl1, Abl, Jtk7 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a-Tev
symmetry	Space Group: P 1 21 1	R_factor 0.207 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.768 59.417 66.896 90.00 98.42 90.00
method	X-Ray Diffraction	resolution	1.91 Å
ligand	VX6 BindingDB	enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the kinase domain of an imatinib-resistant Abl mutant in complex with the Aurora kinase inhibitor VX-680., Young MA, Shah NP, Chao LH, Seeliger M, Milanov ZV, Biggs WH 3rd, Treiber DK, Patel HK, Zarrinkar PP, Lockhart DJ, Sawyers CL, Kuriyan J, Cancer Res. 2006 Jan 15;66(2):1007-14. PMID:16424036

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (2f4j.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 2F4J CSU: Contacts of Structural Units for 2F4J Likely Quarternary Molecular Structure file(s) for 2F4J Structure Factors (360 Kb) Retrieve 2F4J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F4J from S2C, [Save to disk] Re-refined 2f4j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F4J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F4J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F4J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f4j_A] [2f4j] SWISS-PROT database: [P00519] Domain organization of [ABL1_HUMAN] by SWISSPFAM Domain found in 2F4J: [TyrKc ] by SMART

Other resources with information on 2F4J

Community annotation for 2F4J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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