2F4W Ligase date Nov 24, 2005
title Human Ubiquitin-Conjugating Enzyme E2 J2
authors J.R.Walker, G.V.Avvakumov, S.Xue, P.J.Finerty Jr., E.M.Newman, F.Mackenzie, J.Weigelt, M.Sundstrom, C.Arrowsmith, A.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics Consortium (S
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2, J2
Chain: A, B
Ec: 6.3.2.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2j2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28lic
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.070 48.014 91.032 90.00 93.94 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Ligase E.C.6.3.2.19 BRENDA
Primary referenceA human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen., Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S, Mol Cell Proteomics. 2012 Aug;11(8):329-41. Epub 2012 Apr 10. PMID:22496338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2f4w.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (2f4w.pdb2.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2F4W
  • Likely Quarternary Molecular Structure file(s) for 2F4W
  • Structure Factors (172 Kb)
  • Retrieve 2F4W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F4W from S2C, [Save to disk]
  • Re-refined 2f4w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F4W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F4W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F4W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f4w_A] [2f4w_B] [2f4w]
  • SWISS-PROT database: [Q8N2K1]
  • Domain organization of [UB2J2_HUMAN] by SWISSPFAM
  • Domain found in 2F4W: [UBCc ] by SMART
  • Other resources with information on 2F4W
  • Community annotation for 2F4W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science