2F58	Immune System	date	Oct 23, 1998
title	Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic Pept (Including Residues 315-324 Of Hiv-1 Gp120) (Mn Isolate)
authors	R.L.Stanfield, E.Cabezas, A.C.Satterthwait, E.A.Stura, A.T.Profy I.A.Wilson
compound		source
Molecule: Protein (Igg1 Fab 58.2 Antibody (Light Chain)) Chain: L Fragment: Fab Fragment Synonym: Fab 58.2		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc
Molecule: Protein (Igg1 Fab 58.2 Antibody (Heavy Chain)) Chain: H Fragment: Fab Fragment Synonym: Fab 58.2		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc
Molecule: Protein (Hiv-1 Gp120) Chain: P Synonym: V3 Loop Engineered: Yes		Synthetic: Yes Other_details: This Molecule Was Chemically Synthesized
symmetry	Space Group: P 21 21 2	R_factor 0.185 R_Free 0.305
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.080 114.720 49.530 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	ARN	enzyme
related structures	by homologous chain: 1RMF, 2F19
Gene Ontology	Chain Function Process Component L
Primary reference	Dual conformations for the HIV-1 gp120 V3 loop in complexes with different neutralizing fabs., Stanfield R, Cabezas E, Satterthwait A, Stura E, Profy A, Wilson I, Structure Fold Des 1999 Feb 15;7(2):131-42. PMID:10368281

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (2f58.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 2F58 CSU: Contacts of Structural Units for 2F58 Likely Quarternary Molecular Structure file(s) for 2F58 Structure Factors (144 Kb) Retrieve 2F58 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F58 from S2C, [Save to disk] Re-refined 2f58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F58 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F58

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F58, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2f58h1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d2f58h2, region H:114-230 [Jmol] [rasmolscript] [script source]     - Domain d2f58l1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d2f58l2, region L:108-212 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f58_P] [2f58] [2f58_H] [2f58_L] SWISS-PROT database: [P18532] [P01666] Domain organization of [HVM61_MOUSE] [KV3AE_MOUSE] by SWISSPFAM Domains found in 2F58: [IG_like] [IGv ] by SMART

Other resources with information on 2F58

Community annotation for 2F58 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---