2F5F Transcription date Nov 25, 2005
title Bacillus Subtilis Manganese Transport Regulator (Mntr) Bound Manganese, Ac Conformation, Ph 8.5
authors J.I.Kliegman, S.L.Griner, J.D.Helmann, R.G.Brennan, A.Glasfeld
compound source
Molecule: Transcriptional Regulator Mntr
Chain: A, B
Synonym: Manganese Transport Regulator
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Mntr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phb7506
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.630 46.420 75.420 90.00 94.26 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the metal-selective activation of the manganese transport regulator of Bacillus subtilis., Kliegman JI, Griner SL, Helmann JD, Brennan RG, Glasfeld A, Biochemistry. 2006 Mar 21;45(11):3493-505. PMID:16533030
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2f5f.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2F5F
  • CSU: Contacts of Structural Units for 2F5F
  • Likely Quarternary Molecular Structure file(s) for 2F5F
  • Structure Factors (105 Kb)
  • Retrieve 2F5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F5F from S2C, [Save to disk]
  • Re-refined 2f5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2F5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2F5F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F5F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f5f_B] [2f5f] [2f5f_A]
  • SWISS-PROT database: [P54512]
  • Domain organization of [MNTR_BACSU] by SWISSPFAM
  • Domain found in 2F5F: [HTH_DTXR ] by SMART
    • Other resources with information on 2F5F
  • Community annotation for 2F5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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