2F6D	Hydrolase	date	Nov 29, 2005
title	Structure Of The Complex Of A Glucoamylase From Saccharomyco Fibuligera With Acarbose
authors	J.Sevcik, E.Hostinova, A.Solovicova, J.Gasperik, Z.Dauter, K.S.Wi
compound		source
Molecule: Glucoamylase Glu1 Chain: A Synonym: Glucan 1,4-Alpha-Glucosidase, 1,4-Alpha-D-Glucan Glucohydrolase; Ec: 3.2.1.3 Engineered: Yes		Organism_scientific: Saccharomycopsis Fibuligera Organism_taxid: 4944 Strain: Hut 7212 Gene: Glu1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3d
symmetry	Space Group: P 21 21 21	R_factor 0.118 R_Free 0.160
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.580 85.350 97.510 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	AC1, GLC, NA, PO4	enzyme	Hydrolase E.C.3.2.1.3 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the complex of a yeast glucoamylase with acarbose reveals the presence of a raw starch binding site on the catalytic domain., Sevcik J, Hostinova E, Solovicova A, Gasperik J, Dauter Z, Wilson KS, FEBS J. 2006 May;273(10):2161-71. PMID:16649993

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk] Biological Unit Coordinates (2f6d.pdb1.gz) 181 Kb LPC: Ligand-Protein Contacts for 2F6D CSU: Contacts of Structural Units for 2F6D Likely Quarternary Molecular Structure file(s) for 2F6D Structure Factors (456 Kb) Retrieve 2F6D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F6D from S2C, [Save to disk] Re-refined 2f6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F6D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F6D

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F6D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f6d] [2f6d_A] SWISS-PROT database: [P08017] Domain organization of [AMYG_SACFI] by SWISSPFAM

Other resources with information on 2F6D

Community annotation for 2F6D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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