2F89 Transferase date Dec 02, 2005
title Crystal Structure Of Human Fpps In Complex With Pamidronate
authors J.M.Rondeau, F.Bitsch, E.Bourgier, M.Geiser, R.Hemmig, M.Kroemer S.Lehmann, P.Ramage, S.Rieffel, A.Strauss, J.R.Green, W.Jahnke
compound source
Molecule: Farnesyl Diphosphate Synthase
Chain: F
Fragment: Residues 6-353
Synonym: Fpp Synthetase; Fps; Farnesyl Pyrophosphate Synthe
Ec: 2.5.1.1, 2.5.1.10
Engineered: Yes
Other_details: Includes: Dimethylallyltranstransferase Geranyltranstransferase
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fdps, Fps, Kiaa1293
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Tuner(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 41 21 2
R_factor 0.199 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.569 111.569 66.482 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 210, MN, PO4 BindingDB enzyme Transferase E.C.2.5.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referenceStructural basis for the exceptional in vivo efficacy of bisphosphonate drugs., Rondeau JM, Bitsch F, Bourgier E, Geiser M, Hemmig R, Kroemer M, Lehmann S, Ramage P, Rieffel S, Strauss A, Green JR, Jahnke W, ChemMedChem. 2006 Feb;1(2):267-73. PMID:16892359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2f89.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 2F89
  • CSU: Contacts of Structural Units for 2F89
  • Likely Quarternary Molecular Structure file(s) for 2F89
  • Structure Factors (124 Kb)
  • Retrieve 2F89 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F89 from S2C, [Save to disk]
  • Re-refined 2f89 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F89 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F89
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F89, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f89_F] [2f89]
  • SWISS-PROT database: [P14324]
  • Domain organization of [FPPS_HUMAN] by SWISSPFAM
  • Other resources with information on 2F89
  • Community annotation for 2F89 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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