2F8I Hormone Growth Factor date Dec 02, 2005
title Human Transthyretin (Ttr) Complexed With Benzoxazole
authors S.K.Palaninathan, N.N.Mohamedmohaideen, J.C.Sacchettini, J.W.Ke
compound source
Molecule: Transthyretin
Chain: A, B
Synonym: Prealbumin; Tbpa; Ttr; Attr
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttr, Palb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phntr, Pkntr
symmetry Space Group: P 21 21 2
R_factor 0.217 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.072 84.690 64.731 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand 205 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


  • Primary referenceBenzoxazoles as transthyretin amyloid fibril inhibitors: synthesis, evaluation, and mechanism of action., Razavi H, Palaninathan SK, Powers ET, Wiseman RL, Purkey HE, Mohamedmohaideen NN, Deechongkit S, Chiang KP, Dendle MT, Sacchettini JC, Kelly JW, Angew Chem Int Ed Engl 2003 Jun 23;42(24):2758-61. PMID:12820260
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (2f8i.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2f8i.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2F8I
  • CSU: Contacts of Structural Units for 2F8I
  • Likely Quarternary Molecular Structure file(s) for 2F8I
  • Retrieve 2F8I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F8I from S2C, [Save to disk]
  • View 2F8I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F8I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F8I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f8i] [2f8i_A] [2f8i_B]
  • SWISS-PROT database: [P02766]
  • Domain organization of [TTHY_HUMAN] by SWISSPFAM
  • Domain found in 2F8I: [TR_THY ] by SMART
  • Other resources with information on 2F8I
  • Community annotation for 2F8I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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