2F8Q Hydrolase date Dec 03, 2005
title An Alkali Thermostable F10 Xylanase From Alkalophilic Bacil Ng-27
authors S.Ramakumar, K.Manikandan, A.Bhardwaj, A.Ghosh, V.S.Reddy
compound source
Molecule: Alkaline Thermostable Endoxylanase
Chain: A, B
Ec: 3.2.1.8
Organism_scientific: Bacillus Sp. Ng-27
Organism_taxid: 65673
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.505 54.738 131.497 90.00 131.21 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions., Manikandan K, Bhardwaj A, Gupta N, Lokanath NK, Ghosh A, Reddy VS, Ramakumar S, Protein Sci. 2006 Aug;15(8):1951-60. Epub 2006 Jul 5. PMID:16823036
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (2f8q.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (2f8q.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2F8Q
  • CSU: Contacts of Structural Units for 2F8Q
  • Likely Quarternary Molecular Structure file(s) for 2F8Q
  • Structure Factors (387 Kb)
  • Retrieve 2F8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2F8Q from S2C, [Save to disk]
  • Re-refined 2f8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2F8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2F8Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2F8Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2f8q_A] [2f8q] [2f8q_B]
  • SWISS-PROT database: [O30700]
  • Domain organization of [O30700_9BACI] by SWISSPFAM
  • Domain found in 2F8Q: [Glyco_10 ] by SMART
  • Other resources with information on 2F8Q
  • Community annotation for 2F8Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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