2F9B	Hydrolase Blood Clotting	date	Dec 05, 2005
title	Discovery Of Novel Heterocyclic Factor Viia Inhibitors
authors	R.Rai, A.Kolesnikov, P.A.Sprengeler, S.Torkelson, T.Ton, B.A.Katz J.Hendrix, W.D.Shrader, R.Stephens, R.Cabuslay, E.Sanford, W.B.Y
compound		source
Molecule: Coagulation Factor Vii Chain: L Fragment: Light Chain, Residues 61-212 Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Embryonic Kidney Cell Line 293
Molecule: Coagulation Factor Vii Chain: H Fragment: Heavy Chain, Residues 213-466 Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Embryonic Kidney Cell Line 293
Molecule: Tissue Factor Chain: T Fragment: Residues 34-251 Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Des3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21a(+)
symmetry	Space Group: P 1 21 1	R_factor 0.226 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.070 68.940 78.730 90.00 90.17 90.00
method	X-Ray Diffraction	resolution	2.54 Å
ligand	N1H BindingDB	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
Gene Ontology	Chain Function Process Component H L T
Primary reference	Discovery of novel heterocyclic factor VIIa inhibitors., Rai R, Kolesnikov A, Sprengeler PA, Torkelson S, Ton T, Katz BA, Yu C, Hendrix J, Shrader WD, Stephens R, Cabuslay R, Sanford E, Young WB, Bioorg Med Chem Lett. 2006 Feb 2;. PMID:16460932

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (2f9b.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 2F9B CSU: Contacts of Structural Units for 2F9B Likely Quarternary Molecular Structure file(s) for 2F9B Structure Factors (191 Kb) Retrieve 2F9B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F9B from S2C, [Save to disk] Re-refined 2f9b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F9B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F9B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F9B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f9b_L] [2f9b_H] [2f9b_T] [2f9b] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 2F9B: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 2F9B

Community annotation for 2F9B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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