2FDD	Hydrolase	date	Dec 13, 2005
title	Crystal Structure Of Hiv Protease D545701 Bound With Gw0385
authors	R.X.Xu
compound		source
Molecule: Gag-Pol Polyprotein Chain: A, B Fragment: Protease Ec: 3.4.23.16 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41	R_factor 0.217 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.382 55.382 79.169 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.58 Å
ligand	385 BindingDB	enzyme	Hydrolase E.C.3.4.23.16 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Ultra-potent P1 modified arylsulfonamide HIV protease inhibitors: The discovery of GW0385., Miller JF, Andrews CW, Brieger M, Furfine ES, Hale MR, Hanlon MH, Hazen RJ, Kaldor I, McLean EW, Reynolds D, Sammond DM, Spaltenstein A, Tung R, Turner EM, Xu RX, Sherrill RG, Bioorg Med Chem Lett. 2006 Feb 1;. PMID:16458505

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (2fdd.pdb1.gz) 38 Kb LPC: Ligand-Protein Contacts for 2FDD CSU: Contacts of Structural Units for 2FDD Likely Quarternary Molecular Structure file(s) for 2FDD Structure Factors (472 Kb) Retrieve 2FDD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FDD from S2C, [Save to disk] Re-refined 2fdd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FDD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FDD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FDD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fdd_A] [2fdd] [2fdd_B] SWISS-PROT database: [Q7SPG9] Domain organization of [Q7SPG9_9HIV1] by SWISSPFAM

Other resources with information on 2FDD

Community annotation for 2FDD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---