2FDN Electron Transport date Oct 01, 1997
title 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
authors Z.Dauter, K.S.Wilson, L.C.Sieker, J.Meyer, J.M.Moulis
compound source
Molecule: Ferredoxin
Chain: A
 Organism_scientific: Clostridium Acidurici
Organism_taxid: 1556
Atcc: 7906
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.950 33.950 74.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.94 Å
ligand SF4 enzyme
note 2FDN is a representative structure
related structures by homologous chain: 1FCA
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceAtomic resolution (0.94 A) structure of Clostridium acidurici ferredoxin. Detailed geometry of [4Fe-4S] clusters in a protein., Dauter Z, Wilson KS, Sieker LC, Meyer J, Moulis JM, Biochemistry 1997 Dec 23;36(51):16065-73. PMID:9405040
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2fdn.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2FDN
  • CSU: Contacts of Structural Units for 2FDN
  • Likely Quarternary Molecular Structure file(s) for 2FDN
  • Structure Factors (397 Kb)
  • Retrieve 2FDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FDN from S2C, [Save to disk]
  • Re-refined 2fdn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FDN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 2FDN from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FDN, from MSDmotif at EBI
  • Genome occurence of 2FDN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2fdn__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fdn] [2fdn_A]
  • SWISS-PROT database: [P00198]
  • Domain organization of [FER_CLOAC] by SWISSPFAM
    • Other resources with information on 2FDN
  • Community annotation for 2FDN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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