2FE1 Structural Genomics, Unknown Function date Dec 15, 2005
title Crystal Structure Of Pae0151 From Pyrobaculum Aerophilum
authors R.D.Bunker, E.N.Baker, V.L.Arcus
compound source
Molecule: Conserved Hypothetical Protein Pae0151
Chain: A
Fragment: Pae0151
Engineered: Yes
Mutation: Yes
 Organism_scientific: Pyrobaculum Aerophilum
Organism_taxid: 178306
Strain: Im2
Gene: Pae0151
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Pri
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Hta
symmetry Space Group: P 61 2 2
R_factor 0.174 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.343 72.343 96.803 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, CL, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • ribonuclease activity


    • Primary referenceCrystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN-domain (VapC) protein from a toxin-antitoxin operon., Bunker RD, McKenzie JL, Baker EN, Arcus VL, Proteins. 2008 Apr 8;72(1):510-518. PMID:18398909
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (2fe1.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2FE1
  • CSU: Contacts of Structural Units for 2FE1
  • Likely Quarternary Molecular Structure file(s) for 2FE1
  • Structure Factors (57 Kb)
  • Retrieve 2FE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FE1 from S2C, [Save to disk]
  • Re-refined 2fe1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FE1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FE1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fe1] [2fe1_A]
  • SWISS-PROT database: [Q8ZZP3]
  • Domain organization of [Q8ZZP3_PYRAE] by SWISSPFAM
    • Other resources with information on 2FE1
  • Community annotation for 2FE1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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