2FE5 Structural Protein date Dec 15, 2005
title The Crystal Structure Of The Second Pdz Domain Of Human Dlg3
authors E.Ugochukwu, C.Phillips, G.Schoch, G.Berridge, E.Salah, S.Colebro C.Smee, P.Savitsky, J.Bray, J.Elkins, D.Doyle, G.Bunkoczi, J.Debr A.Turnbull, F.Gorrec, F.Von Delft, M.Sundstrom, C.Arrowsmith, J. A.Edwards, Structural Genomics Consortium (Sgc)
compound source
Molecule: Presynaptic Protein Sap102
Chain: A
Fragment: Pdz2
Synonym: Synapse-Associated Protein 102, Neuroendocrine-Dlg Discs Large Homolog 3, Dlg3, Dlg3a;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlg3, Kiaa1232
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.113 R_Free 0.150
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.487 40.242 33.340 90.00 92.80 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand GOL, SO4 enzyme
note 2FE5 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2fe5.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2FE5
  • CSU: Contacts of Structural Units for 2FE5
  • Likely Quarternary Molecular Structure file(s) for 2FE5
  • Structure Factors (184 Kb)
  • Retrieve 2FE5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FE5 from S2C, [Save to disk]
  • Re-refined 2fe5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FE5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FE5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FE5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fe5] [2fe5_A]
  • SWISS-PROT database: [Q92796]
  • Domain organization of [DLG3_HUMAN] by SWISSPFAM
  • Domain found in 2FE5: [PDZ ] by SMART
    • Other resources with information on 2FE5
  • Community annotation for 2FE5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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